Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
UCEC | rs17720205 | chr10:51579413 | C/T | 0 | 123 | 14.17 | 11.47 | 1.67 | KM Plot |
UCEC | rs2399672 | chr11:93247139 | C/T | 7.25E-5 | 125 | 12.57 | 15.07 | 13.35 | KM Plot |
UCEC | rs28470877 | chr15:82538138 | T/C | 2.13E-7 | 125 | 14.87 | 13.07 | 8.1 | KM Plot |
UCEC | rs2867649 | chr15:82554672 | C/T | 1.8E-5 | 123 | 14.87 | 13.22 | 4.88 | KM Plot |
UCEC | rs28694364 | chr15:82500460 | A/G | 2.26E-7 | 124 | 14.87 | 13.07 | 11.37 | KM Plot |
UCEC | rs28697264 | chr15:82557900 | T/C | 0.000181 | 124 | 14.87 | 13.37 | 4.88 | KM Plot |
UCEC | rs28876157 | chr15:82509049 | T/C | 2.26E-7 | 124 | 14.87 | 13.07 | 11.37 | KM Plot |
UCEC | rs34161370 | chr2:48834008 | G/C | 2.87E-9 | 124 | 14.03 | 15.17 | 11.32 | KM Plot |
UCEC | rs34688726 | chr2:48833998 | C/T | 2.87E-9 | 124 | 14.03 | 15.17 | 11.32 | KM Plot |
UCEC | rs34964058 | chr15:33755805 | CA/C | 0.000108 | 123 | 13.2 | 14.1 | 12.57 | KM Plot |
UCEC | rs35023756 | chr2:48833578 | A/G | 2.87E-9 | 124 | 14.03 | 15.17 | 11.32 | KM Plot |
UCEC | rs35786999 | chr2:48834031 | A/AC | 2.87E-9 | 124 | 14.03 | 15.17 | 11.32 | KM Plot |
UCEC | rs36054197 | chr2:48833572 | G/C | 2.87E-9 | 124 | 14.03 | 15.17 | 11.32 | KM Plot |
UCEC | rs375867629 | chr1:213083577 | A/T | 8.88E-8 | 123 | 14.65 | 10.97 | 2.38 | KM Plot |
UCEC | rs58128459 | chr1:213075497 | G/C | 1.13E-7 | 124 | 14.65 | 12.17 | 2.38 | KM Plot |